PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dusal.0399s00006.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
Family NF-YC
Protein Properties Length: 856aa    MW: 87857.8 Da    PI: 6.0271
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dusal.0399s00006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC40.37.1e-13631402197
                 NF-YC  21 lPl.arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                            Pl arikk+++adedv +is  +P+ll++a elf+ +l   + + a++ + +t+  s ++  v+  +  dfl ++v 
  Dusal.0399s00006.1.p  63 CPLaARIKKLMQADEDVGKISQATPTLLARAMELFLKKLVEGTCNVAQSRQAKTVSTSHLKHFVSMDKSTDFLKEKVA 140
                           57636********************************************************************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008084.6E-1367124IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.14E-1567143IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.9E-2167126IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 856 aa     Download sequence    Send to blast
MQFSNKIFSH RQLSAVEMKS EDKVKAEEKV KAEDDAALER EEEEAREQEG QLRPSLRQAR  60
KPCPLAARIK KLMQADEDVG KISQATPTLL ARAMELFLKK LVEGTCNVAQ SRQAKTVSTS  120
HLKHFVSMDK STDFLKEKVA SAPDLGDAPE AKPKRKRSSG LDKAGGAEGG EGPQEGGGEE  180
GVGQPRKRGP RRSAAQKAAE AEAEAEEAEA LEGVMASPTA AGSGGRGRKR GGCAEGGGRG  240
GRKRKGAGAG AGEEQQQQHH QQLQQQQQPM QGAALMSYER ILAQVREMAG PMGLQEDQVH  300
TMAAQMHAMQ SNPELQQHLM QPSVDPQLAA LQPTPQLGQP QPQPQQLPFL PPLQLQQQQQ  360
QQAQPQPQPQ MPFLPQLQLQ QQQPHPQLPF LLPQQLQQQQ HLQPQLPFLP PLQLQQQQQP  420
QLPFLPPLQL QQQQQPQLPF LPPLQLQQQQ AQQQQQQSLD LAGHAQGGND PAAAAAAAAA  480
AAAVTGFPGG GGGNAAATAA AAVAGFQGGA GDASAGGVPH IKAEGQGEQG ARSIEGGGPS  540
QEGGAGAHIK QEQGTTGVLG MGGMSVPGDA SGGGGMPSIV GLPPLSGFGG GGGDSGGLGG  600
GGDGNMDDLF AAAAAAAAAE ISGNMAGQPQ PQASVPPPFH PQPLLQQQQQ QQQPGAPSEP  660
FSAPTINMPS SGVGISNSGS GQSRPGDSMG GAGSAFSKPG PSLSSALRGS GHPLSLRPTH  720
PMTLKKGSKG PGAKDKAGQG GADGAQKQSQ PQSLPPQTAV TQPHNPDAAS TIPPPESAIN  780
KDSFAPPEGV PTLAPASQPS SVRGEEEASQ PAAGGAPVSA EPLQAAPLGG GVPCVPVHLA  840
HLGVGGAVED DDYDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A4e-18671291577Transcription Regulator NC2 alpha chain
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227244RKRGGCAEGGGRGGRKRK
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP33431313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.12e-21nuclear factor Y, subunit C11